Thank you, Jon...
I appreciate your feedback... when it comes to choosing a few great utilities it gets a bit confusing.
I'll think on the MicroMat software, probably don't really need it. DiskWarrior, IMO... is a "must have." It's proven itself over and over.
I believe I will give TinkerTool a shot... looks interesting... I also have OnyX and I really like that too.
As to verifying or repairing permissions in El Capitan from what I've seen and read it is not necessary as a general rule. However there are some times it comes in handy, the recommendation I've seen most is not to run it often... at all, just the odd occasion it might be helpful.
As suggested, this is not really something that should be run on a regular basis as any part of Mac maintenance routine, and it’s rarely necessary, which is likely why Apple pulled it from the Disk Utility application.
From:
http://osxdaily.com/2015/11/04/verify-repair-permissions-mac-os-x/I like that site, it's quite helpful... that article explains how to run it from the Command line which is essentially what OnyX does I believe. The commands still exist in El Capitan, apparently they've removed them after that. I find that permissions in El Capitan are all over the place and to me that's always be quite abnormal... but as Paddy confirmed for me in another thread... it's normal in the new OS's.
I don't run OnyX really often, generally just when I think of it like when I run DiskWarrior now and then to check the disk optimization. I like that periodically you can unload some logs and Cache contents... things like that with OnyX.
In any case in El Capitan for permissions you have to use OnyX or the command line.